Comments (1)
Finally going through backlog issues. I didn't respond to this initially because it's essentially a feature request, and was in conflict with ongoing unpublished research I was participating in with other groups. I could not in good conscience discuss FISH spot registration openly without the approval of other stake holders in those projects. What I can say is that using the functionality already present in bigstream it is possible to register FISH spots to each other round to round - assuming the same spots are labeled of course. No new features need to be added to the package to make this work, but a good deal of experience and practice is required to learn how to utilize the existing functions to do this well.
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Related Issues (20)
- code bug HOT 2
- syntax error in PyPI version HOT 2
- easifish tutorial: issue with unknown kwargs HOT 9
- timing analysis on the RnR-ExM challenge HOT 3
- global RANSAC affine -- insufficient fixed spots found HOT 3
- rerunning the same code block in jupyter notebook HOT 4
- Global RANSAC affine -- difference between return default and skip? HOT 1
- adding option to not gaussian filter transforms in motion_correct HOT 2
- Misalignment of high res image.
- `NameError` due to missing `psutil` import in `bigstream.utility` HOT 1
- bigstream.level_set.foreground_segmentation should not force only the largest connected component
- data for rnr-exm_notebooks HOT 1
- dask variables do not fit LocalCluster HOT 3
- Feature request: exceptions when alignment fails HOT 1
- Defaults dictionaries for all optimizers and metrics HOT 1
- Two feature-requests: virtual masking, and origins for distributed functions HOT 4
- Feature request - refactor example notebooks so all parameters are automatically findable
- Feature request: make logging print outs optional with a verbose parameter
- Bug fix: default background setting for level_set.foreground_segmentation is not good
- Transforming coordinates with saved affine matrix does not match transformed volume
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