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jannisborn avatar jannisborn commented on June 20, 2024

Hi @mwarqee,

Thanks for the interest in this tool and reporting this issue.
I really dont know what you expect from the tool in this case. Arxiv is a preprint server. How should the journal be set to anything? By definition those are preprints and not peer-reviewed. Furthermore, arxiv does not assign DOIs so how should there be any?

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mwarqee avatar mwarqee commented on June 20, 2024

Apologies for not providing more detail, perhaps I misunderstood the purpose of the module.
This section refers to the option of downloading PDFs based on the jsonl file

from paperscraper.pdf import save_pdf_from_dump

# Save PDFs in current folder and name the files by their DOI
save_pdf_from_dump('medrxiv_covid_ai_imaging.jsonl', pdf_path='.', key_to_save='doi')

Since the dump does not cotain any DOI then no files will be downloaded. Furthermore if I check the arxiv site for one paper there is an arXiv doi
https://doi.org/10.48550/arXiv.2302.11382 and coresponding link for the paper - https://arxiv.org/pdf/2302.11382

So I am bit puzzled, or maybe misunderstanding how the paper download should work for arXiv?

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jannisborn avatar jannisborn commented on June 20, 2024

Fair point but this is a completely different thing from what you described in your first post. Arxiv introduced DOIs in 2022 (see https://blog.arxiv.org/2022/02/17/new-arxiv-articles-are-now-automatically-assigned-dois/), so while the vast majority of the arxiv DB will still not have DOIs a small fraction of recent papers will have DOIs. For those papers, it would be great if the DOI would be added to the jsonl dump, on this I completely agree, thanks for pointing this out

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jannisborn avatar jannisborn commented on June 20, 2024

HI @mwarqee, please check the PR I opened (#27)

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