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Hello there šŸ‘‹

I'm a PhD researcher at the University of Oxford, with a background in Natural Sciences (University of Exeter) and a specialisation in machine learning. I'm experienced in and excited about interdisciplinary scientific work and want to use my knowledge and skills to have a real-world impact. I firmly believe that the better we understand the problems in front of us, the stronger our collective solutions will be.

  • šŸ”­ Iā€™m currently working on open-source tools for cleaning genetics data, and improving machine learning on DNA sequences
  • šŸŒ± Iā€™m currently learning Rust, and how to make my own graphics in Blender
  • šŸ““ Iā€™m looking to collaborate on projects in Explainable AI and Artificial Life
  • šŸ’¬ Ask me about novel nature-inspired ways of developing AI, the worlds simplest cookie recipe, and why I'm always running away from zombies!

I'm currently looking for work - so if you need a passionate programmer with a strong scientific background and enthusiasm to work alongside other passionate people, I'd love to hear from you!

Stay safe out there!

James Ashford's Projects

cellcycle-references icon cellcycle-references

Repository to store the references sheet for my posters at the Cell Cycle workshop in Konstanz 2022.

core-rt-trackhub icon core-rt-trackhub

Publc repository of tracks of the aggregated core RT human behaviours, and a genome-wide prediction at 10kb

crc-model icon crc-model

Scripts and models to reproduce our work on Colorectal Cancer modelling in the 2022 Wellcome CompSysBio Course

eigenfish icon eigenfish

# Eigenfish Ideas by the wonderful ["Computational Discovery on Jupyter"](https://computational-discovery-on-jupyter.github.io/Computational-Discovery-on-Jupyter/index.html) by Neil J. Calkin, Eunice Y.S. Chan, and Robert M. Corless, and the gallery of the [Bohemian Matrices site](http://bohemianmatrices.com).

gaussian-uniform-mixture icon gaussian-uniform-mixture

Trainable mixture of gaussian and uniform distributions, with a focus on modelling biological expression data.

hyperdim-proteins icon hyperdim-proteins

Predicting protein family from amino-acid sequences using hyper-dimensional computing!

minnist icon minnist

Experiments with the "Hello World" of deep computer vision - the MNIST dataset.

oxhack-2020 icon oxhack-2020

Resources and Code for our team in Oxford Hack 2020

particle_life icon particle_life

A Particle Life simulation written in Rust with a few tweaks

pattern-buffer icon pattern-buffer

šŸ§® Fast pattern counting on small-alphabet sequences with GPU acceleration

rcps-pytorch icon rcps-pytorch

šŸ§¬ Reverse-complement parameter sharing (RCPS) layers for machine learning on DNA sequences in PyTorch

rusty_dna_mutations icon rusty_dna_mutations

A Rusty reimplementation of series of DNA mutation kinetics simulations first carried out in SahakyanLab/GenomicPR2Simulations.

rusty_replicon icon rusty_replicon

A reimplementation of "Replicon" (Gindin et. al. 2014) as Rust programming practice

thompson icon thompson

Code for controlling and reading sensor data from Thompson

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