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alphafold

Open source code for AlphaFold.

apa-scan

Detection and visualization of annotated and potential Alternative Polyadenylation events

arewebioyet.github.io

Rust in bioinformatics and computational biology

bbmap-graal

biofast

Benchmarking programming languages/implementations for common tasks in Bioinformatics

chopper

crispr-licht

deconseq

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

etc

fastqc-rs

A quality control tool for FASTQ files written in rust

filter_fastq_by_average_base_quality

genomes

genome assembly and annotation scripts

go-test

testing go

go2tr

hac-to-duplex

harmony

Compute error profiles from alignments

herro

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1, Kit 14, Ultra-long (UL) reads.

ideel

Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes

immunome

immunome_2014

immunome_arc

immunome_urtd

jovian

Detecting variants in NGS short read data by sequence-to-sequence modeling

juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

julia-bio

some JuliaLang bioinformatics scripts in the form of gists

meson-python

Meson PEP 517 Python build backend

minidot

Fast and pretty dotplots for whole genomes assemblies using minimap2 and R/ggplot2

minipolish

A tool for Racon polishing of miniasm assemblies

mudskipper

A tool for projecting genomic alignments to transcriptomic coordinates