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Jennifer Müller's Projects

bacass icon bacass

Simple bacterial assembly and annotation pipeline

fastaptamer-2.0 icon fastaptamer-2.0

This repository holds the FASTAptameR 2.0 code and related resources.

live-nano icon live-nano

A shiny GUI for real-time species identification from Nanopore data

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nf-co.re icon nf-co.re

Code and files for the main nf-core website.

nxf-bcl icon nxf-bcl

A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)

rnaseq icon rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

tools icon tools

Python package with helper tools for the nf-core community.

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