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Jessica Rowell's Projects

cv icon cv

My CV and resume

docker-builds icon docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

helpers icon helpers

A repo of functions I think will be useful to me in my work

hmas-internal-validation icon hmas-internal-validation

This repository contains scripts and other documents pertaining to internal validation of the HMAS QC pipeline.

hmas-positive-controls icon hmas-positive-controls

Data pertaining to the Enterics AMR Primer Panel positive controls design and testing (2019). The objective was to design positive controls for the highly-multiplexed amplicon sequencing (HMAS) primer panel.

hmas-qc-pipeline icon hmas-qc-pipeline

A pipeline for performing quality control on HMAS data, in preparation for downstream MLST-like or AMR-like analyses.

phoenix icon phoenix

🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

stress-testing icon stress-testing

Public repository to storing sample sheets and other files needed for stress testing.

ubuntu-setup icon ubuntu-setup

Contains information I use to set up my PC builds (or WSL) when I screw them up

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