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Julien Eudine's Projects

config-files icon config-files

A backup of my different configuration files and a way to easily and quickly install my work environment on Debian-based distributions.

genome-on-diet icon genome-on-diet

Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).

gseq icon gseq

GSeq is a realtime visual performance program written in Rust based on wgpu. GSeq reacts to the audio input to animate the visuals.

light_seq icon light_seq

Raspberry Pi based light show program reacting to the audio input.

mersenne-twister-hardware icon mersenne-twister-hardware

A flexible hardware module written in SystemVerilog which implements the Mersene twister (using a 32-bit word length). A simulation and a test bench written in SystemC, which uses Verilator were created in order to verify the correctness and to measure performance of the hardware module.

minimap2 icon minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

mtalloc icon mtalloc

A lightweight library to efficiently allocate memory in multithreaded applications.

samcomp icon samcomp

A comparison tool for Sequence Alignment/Map files written in Rust.

samfilt icon samfilt

A filtering tool for Sequence Alignment/Map files written in Rust.

skinning-subdivision-surfaces icon skinning-subdivision-surfaces

Research application aiming to optimize in real time the deformations of control points in order to obtain a smooth and intuitively animated subdivision surface.

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