jgibson2 Goto Github PK

anthem

Approximation of Thermodynamic Parameter Models

argo-helm

ArgoProj Helm Charts

argo-workflows

Workflow engine for Kubernetes

bayesopt.jl

Yet Another Bayesian Optimization Library in Julia

bcaller

A Fast, Accurate Bayesian SNP Caller

biol4525-lab-notebooks

Lab notebooks

cnvfinder

Tool to find Copy Number Variations based on unique kmers in short reads

contrastive-learning

Contrastive learning experiments

covid-track-backend

Backend for tracking COVID-19 cases

crfasrnn_pytorch

Bayesian optimization of CRF-as-RNN parameters. See report.pdf for details.

cutadapt-vbim

cutadapt removes adapter sequences from sequencing reads

diffusion

Diffusion models (not working???)

docker-slim

DockerSlim (docker-slim): Don't change anything in your Docker container image and minify it by up to 30x (and for compiled languages even more) making it secure too! (free and open source)

dotty-bois

For @lxu07

fist

A lightweight full-text index server with a focus on speed and efficiency.

haplocluster

Python-based utilities for classifying, sorting, clustering, and organizing haplotypes

jgibson2.github.io

A couple projects I'm working on: AR-based protein and small molecule visualization, web-based interactive data exploration for exploring renewable resource power generation capacity, etc.

loom-threads

A C++ actor framework that's easy to use

miniqual

Python-based utilities for analyzing Oxford Nanopore data quality

nerf_pl

NeRF (Neural Radiance Fields) and NeRF in the Wild using pytorch-lightning

neuralrecon

Code for "NeuralRecon: Real-Time Coherent 3D Reconstruction from Monocular Video", CVPR 2021 oral

nonapus

Control board for 9 servos. Based on Teensy 3.2.

notify

Use Twilio API to notify via text when jobs are done.

plantsscraper

portrait_mode

Implementation of standalone portrait mode from semi-stereo images

predict-kingdom

ML tutorial for predicting kingdoms of organisms from codon usage frequencies

pytorch-experiments

Experiments in PyTorch

pytorch-lightning

The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate.

pytorch-ngp

An implementation of NVIDIA's Instant Neural Graphics Primitives in PyTorch (Lightning)

quicktrim

Short Read trimming application written in C.