Joe Greener's Projects
Predict allosteric pockets on proteins
An implementation of the DeepMind's AlphaFold based on PyTorch for research
A curated list of awesome Bioinformatics libraries and software.
Types and utilities for handling backbones
Bioinformatics and Computational Biology Infrastructure for Julia
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
The Biochemical Algorithms Library in Julia
A collection of bioinformatics file format specimens to test against
HTML/JS based user interfaces for BioJava
Project website
Official git repository for Biopython (converted from CVS)
Source of biopython.org website, migrated from MediaWiki
Biological sequences for the julia language
Repository for documentation, guidelines, and policy on contributions to BioJulia repositories
A library of useful callbacks for hybrid scientific machine learning (SciML) with augmented differential equation solvers
Documentation for the DiffEq differential equations and scientific machine learning (SciML) ecosystem
High-performance automatic differentiation of LLVM and MLIR.
Julia bindings for the Enzyme automatic differentiator
Random things I need a public link for
A lightweight framework for writing genetic algorithms in Julia
Julia implementation of the ISOKANN algorithm for the computation of invariant subspaces of Koopman operators
My personal website
The Julia Programming Language
Learning what to do in Julia by learning what not to do in Julia
An opinionated code formatter for Julia. Plot twist - the opinion is your own.
Julia Project web site
The website of the JuliaMolSim organisation
Julia toolbox for molecular simulations
Molecular dynamics simulation of a simple Lennard Jones system
View proteins and trajectories in the terminal