jhird Goto Github PK

ai_startup_prototype

This is the code for "Watch Me Build an AI Startup" By Siraj Raval on Youtube

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

bitstarter

brain-tokyo-workshop

🧠🗼

cho

Coding projects from my research

cobrapy

COBRApy is a package for constraints-based modeling of biological networks

cpi_prediction

This is a code for compound-protein interaction (CPI) prediction based on a graph neural network (GNN) for compounds and a convolutional neural network (CNN) for proteins.

ctci-6th-edition-python

Cracking the Coding Interview 6th Ed. Python Solutions

data-science--cheat-sheet

Cheat Sheets

deep-learning-for-drug-protein-interactions

A Python implementation for training a neural network for predicting drug-protein interactions using Keras and Tensorflow

deep_reinforcement_learning_course

Notebooks from the free course Deep Reinforcement Learning with Tensorflow

detectron

FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.

escher

Build, view, share, and embed pathway maps.

et357_2018a

Course Materials for ET357 (Computational Modeling in Medicine and Bioengineering) as taught during the Spring semester 2018A at the University of Guadalajara (CUCEI)

genetic-circuit-rock-paper-scissors

A GRO implementation of a system comprising three E. coli strains playing rock-paper-scissors inside a chemostat

graphsage

Representation learning on large graphs using stochastic graph convolutions.

hmo_microbiome_deepdive

investment-portfolio-optimization

MATLAB and R examples for computing Markowitz Optimization on a toy investment Portfolio

java_datastructures

Implementation of basic data structures in Java

low-n-protein-engineering

Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".

masif

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

mat2vec

Supplementary Materials for Tshitoyan et al. "Unsupervised word embeddings capture latent knowledge from materials science literature", Nature (2019).

mlde

A machine-learning package for navigating combinatorial protein fitness landscapes.

mr1-screening

In silico screening of cancer metabolites that may bind MR1 receptor

nesmdb

The NES Music Database: use machine learning to compose music for the Nintendo Entertainment System!

projects

All kinds of pipeline,i.e, Diffexpression,Variant call.

prose

Multi-task and masked language model-based protein sequence embedding models.

proteingan

quantitative-trading

Notebooks and Scripts for Quant Trading using Python and Yahoo Finance API

sgidspace