jiananlin Goto Github PK

ballgown_from_rsem_modify

solve an intron position error in ballgownrsem.R from https://github.com/alyssafrazee/ballgown

ballr

Interactive NBA and NCAA Shot Charts with R and Shiny

bam2wig

Conversion of a BAM alignment to wiggle and bigwig coverage files, with flexible reporting options

chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

clipper

A tool to identify CLIP-seq peaks

dimer

Dimer is a Python-based package for testing differential methylation in MeRIP-Seq data.

icount

iCount, protein-RNA interaction analytics

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)

ixnos

Neural network regression model of translation elongation rate, with DP algorithm to optimize fast coding sequences under model

jiananlin

Config files for my GitHub profile.

markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

merge-data-frames-in-python-r-notebooks

https://towardsdatascience.com/merge-data-frames-in-python-r-725c0f874147

multicollinearity-discussion-notebook

Related to my post on Medium (https://towardsdatascience.com/consider-multicollinearity-in-my-model-or-not-7aca16e74773)

nba_py

Python client for NBA statistics located at stats.nba.com

plotly

An interactive graphing library for R

pras

PRAS: predicting functional targets of RNA binding proteins based on CLIP-seq peaks

present-the-feature-importance-of-a-random-forest-classifier

Medium source code and data

pyenv

Simple Python version management

ribodiff

RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data

ribotish

Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data

riprap

Riprap Predict RNA structural disruptions induced by single nucleotide variants

rsem

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

rsem_tutorial

A short tutorial on how to use RSEM

star

RNA-seq aligner

statistics-books

"If your experiment needs a statistician, you need a better experiment." ― Ernest Rutherford

tss_enrichment_score_calculation

ATAC-seq data TSS enrichment score calculation

what_if_apply_too_slow