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2017-ucsc-metagenomics

Workshop materials for shotgun metagenomics

biobakery

bioBakery tools for meta'omic profiling

biodata

All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")

bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

chatgpt_academic

科研工作专用ChatGPT拓展，特别优化学术Paper润色体验，支持自定义快捷按钮，支持自定义函数插件，支持markdown表格显示，Tex公式双显示，代码显示功能完善，新增本地Python/C++/Go项目树剖析功能/项目源代码自译解能力，新增PDF和Word文献批量总结功能/PDF论文全文翻译功能

deskreen

Deskreen turns any device with a web browser into a secondary screen for your computer

diamond

Accelerated BLAST compatible local sequence aligner.

easymetagenome

Easy Metagenome Pipeline 2019 (1.0)

folding_tools

A collection of *fold* tools

free-programming-books

:books: Freely available programming books

freecodecamp

freeCodeCamp.org's open-source codebase and curriculum. Learn to code for free.

genome_annotations

Annotation workflow for archaeal and bacterial genomes from the Spang team

ggplot2-book

ggplot2: elegant graphics for data analysis

gnps_workflows

Public Workflows at GNPS

humann

HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

kraken2

The second version of the Kraken taxonomic sequence classification system

krakentools

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

krona

Interactively explore metagenomes and more from a web browser.

lip_metgen

Correlation and network analysis of metalipidomics and metagenomics data

machine-learning-learning-notes

周志华《机器学习》又称西瓜书是一本较为全面的书籍，书中详细介绍了机器学习领域不同类型的算法(例如：监督学习、无监督学习、半监督学习、强化学习、集成降维、特征选择等)，记录了本人在学习过程中的理解思路与扩展知识点，希望对新人阅读西瓜书有所帮助！

marine-aoa-gdgt-distribution

This is a repository for "BeyondTEX86" project.

metaboanalystr

R package for MetaboAnalyst

metabox

a toolbox for metabolomic data analysis, visualization and ‘omic’ integration

metaphlan

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

microbiomestatplot

Interpretation and visualization of microbiome charts

mimb_16s

Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology

mmgenome

Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes

ms-cleanr

mtbinfo.github.io