Jihong Tang's Projects
source code for www.bespokeds.org website
Bespoke data science learning
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Notes for cancer genomics analysis pipeline and skills
[source] CELLO - Cancer EvoLution toolbox for LOngitudinal data
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
This is the folder to organize the notes from different coding languages
Recombination of the small coding projects about the computational genomics topics (Python based)
collaborated project aiming at combining data visulization methods in different programming languages(feel the data with our eyes!)
Coming up with better ideas...
My configuration files on OSX
dplyr: A grammar of data manipulation
This is the R-based Shiny web application to read in the .fcs file and transfer it into several human headable files and make several downstream analysis
This is a tutorial on how to run jupter on hpc
This is the repository to store the codes and materials in the KDD group project for Group (No. )
Bioinfo procedure of methylation analysis
南京大学学位论文XeLaTeX模板
A toolkit created for some bioinformatics work.
configuration on Ubuntu 14.04.5LTS
Document the proteomics quantification pipeline based on MaxQuant for TMT labeled MS data
Data analysis and visualization projects based on R
Quantitative modeling of licensing codes for RNAs to enter the microRNA processing pathway
Personal storage of the Rosalind bioinformatics programming problems
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
egaz and alignDB work with external (NCBI/EBI) data