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Name: Jin
Type: User
Name: Jin
Type: User
Course 18.S191 at MIT, fall 2020 - Introduction to computational thinking with Julia:
Codes for simulating the Eden model in 3D
simulated the spatiotemporal dynamics of a multicellular tumor using a three-dimensional (3D) agent-based model, in which the cells in the tumor are represented as interacting objects. In this model, the cells grow stochastically as a function of time and divide upon reaching a critical size. The cell-to-cell interaction is characterized by direct elastic and adhesive forces. We also consider cell-to-cell and cell-to-matrix damping as a way of accounting for the effects of friction experienced by a moving cell because of other cells and by the extracellular matrix (ECM) (or collagen matrix), respectively. Each cell is modeled as a deformable sphere with a time-dependent radius. Several physical properties, such as the radius, elastic modulus, membrane receptor and ligand concentration, and adhesive interaction, characterize each cell.
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
An exhaustive reference to problems seen in real-world data along with suggestions on how to resolve them.
Bayesian Analysis with Python by Packt
Experiments to show the usage of deep learning to detect breast cancer from breast histopathology images
simple tutorial on Machine Learning with Scikitlearn
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening
Quick tutorial of scientific computing with Python using a real physics application.
Modeling signaling networks in cancer
jupyter python scripts for treatment options and success rates for cancer and rat eradication
This is the repository for paper titled as "Convolutional neural network models for cancer type prediction based on gene expression".
code associated with thesis chapters for clonal evolution
Codes for parameter estimation and sensitivity analysis of QSP models for colon cancer. This is a part of the National Cancer Institute funded project titled "Data-driven QSP software for personalized colon cancer treatment" Achyuth Manoj, Susanth Kakarla, Suvra Pal and Souvik Roy.
QSP model of immune response to COVID19
Open Source QSP model describing SARS-CoV-2 virus and host cell life cycles, immune response and therapeutic treatments
Supplementary material for CPT tutorial on logic modeling for quantitative systems pharmacology
This tutorial shows how to create very simple simulation or agent-based models of cultural evolution in R
R Markdown code for visualizing raw and summarized data + regression models
Repo for the Deep Learning Nanodegree Foundations program.
Snakemake pipeline to produce figures for "Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios"
These are MATLAB code I wrote while having Coursera Course Dynamic Modeling Methods for System Biology
A 4-compartment (which can be egeneralized to higher compartments) was studied to understand the phenotypic heterogeneity in modeling cancer evolution.
Evolutionary triage in Cancer: Drivers, Passengers, and βNeverβ Mutations
A declarative, efficient, and flexible JavaScript library for building user interfaces.
π Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. πππ
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google β€οΈ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.