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copdgene-wgs

diabetes-classifier

Classification prediction models of diabetes NHANES data in R: Logistic Regression, Random Forest, Naive Bayes and XGBoost comparisons

flowchat

freebook--

免费书籍，不定期更新

galaxy

Data intensive science for everyone.

gan-for-bulk-rnaseq

GAN-for-bulk-RNASeq

gdcrnatools

GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC

geomirror

ggsankey

Make sankey, alluvial and sankey bump plots in ggplot

gpgps

This is the code for the paper "GPGPS: a robust prognostic gene pair signature of glioma ensembling IDH mutation and 1p/19q co-deletion"

gpt_academic

为ChatGPT/GLM提供实用化交互界面，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm2等本地模型。兼容文心一言, moss, llama2, rwkv, claude2, 通义千问, 书生, 讯飞星火等。

human-fetal-pancreas

analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages

idmap1

idmap2

idmap3

irls

Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal cancer

lefse

mrlocus

Mendelian Randomization of gene expression (exposure) on GWAS traits (outcome). See website for software usage guide:

mrlocuspaper

Repository of the code used in the MRLocus paper. For the software see: https://mikelove.github.io/mrlocus

nhanes-logistic-regression

Load/Clean NHANES data to build a binary classification model using logistic regression.

nhanes-r-programming

This repository should help people that would like to code in R and work with the National Health and Nutrition Examination Survey (NHANES). Some topics corved are SQL , logistic regression.... etc

pgwas_discovery

Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"

picrust2

Code, unit tests, and tutorials for running PICRUSt2

rbd_smr

Using SMR for eQTL mendelian randomization.

scphere

shinygeo

Gene Expression Omnibus Analysis with Shiny -

singlecell-deepfeature

Single Cell Generative Adversarial Network (scGAN)

spatial-bonemarrow-atlas

This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Proteomic Profiling Reveals the Cellular Composition and Spatial Organization of the Human Bone Marrow Microenvironment"

twosamplemr

R package for performing 2-sample MR using MR-Base database