jinjie-duan Goto Github PK

batchqc

Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.

bhglm

BhGLM (Bayesian hierarchical GLMs and survival models)

bhr

Suite of heritability and genetic correlation estimation tools for exome-sequencing data

bifrost

bipex

Bipolar exome QC and analyses

blog

This is a template for R bloggers based on Jekyll Now.

cookiecutter-snakemake-analysis-pipeline

A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

gemini

a lightweight db framework for exploring genetic variation.

gnomad-sv-pipeline

Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2019)

gnomad_hail

Hail helper functions for gnomAD/MacArthur lab

gnomad_qc

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

gwaspipeline

hail-elasticsearch-pipelines

notes, configuration, and other files related to the new seqr db

jinjie-duan.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

minidplyr

psychiatric-disorder-phewas-ukbb

r-course

r4ds-exercise-solutions

Exercise solutions to "R for Data Science"

recipe

A guacamole recipe (used in teaching Git).

rmd_workshop

Materials for a workshop on writing reproducible research papers with R Markdown

rrtools-wkshp-materials

Materials associated with Reproducible Research in R with rrtools workshop.

rvtests

Rare variant test software for next generation sequencing data

rworkflow-nwfsc-2021

Webpage for 2021 workshops

sarek

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

slurm

Cookiecutter for snakemake slurm profile

snakemake-slurm-tutorial

Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler

spark-notes

starter-hugo-academic