Comments (3)
The RPKM calculation of paired-end reads is FPKM that counts read names. I think there is K00001-mapped reads with an identical name in both 35.uniprot.blast.txt and 36.uniprot.blast.txt.
The recent update on FMAP includes the fix of this problem, so it distinguishes reads from separate input files. Please try with the latest version.
from fmap.
Ok great. I have updated. Fixed !!!
from fmap.
Thanks @jiwoongbio
from fmap.
Related Issues (20)
- Failed to create thread HOT 1
- Error in FMAP_plot.pl HOT 13
- Getting error at FMAP_quantification.pl HOT 5
- Comparison usage HOT 5
- RPK calculation HOT 2
- Getting direction (log2foldchange) of significantly different pathways and operons HOT 2
- Interpretation of FMAP pathway plot HOT 5
- DIAMOND as no option --query HOT 7
- Heatmap of KOs used in pathway analysis HOT 1
- Generate pathway maps without comparison HOT 1
- Cannot Prepare Databases HOT 1
- Dealing with Paired End Files HOT 1
- FMAP_comparison.pl error - what is right abundance.txt format? HOT 2
- 32 bit usearch memory limit error when using usearch in the FMP_download.pl HOT 1
- Download error HOT 2
- ERROR in FMAP_quantification.pl
- Running FMAP_all.pl on Linux -" File is not available
- Conda Install
- FMAP_module.pl problem
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from fmap.