slow growers about grodon HOT 2 CLOSED

I wish I had a better answer for you here, but the best I can do is say "maybe". If you look at figure 1a in the preprint it looks like there is still a positive correlation between gRodon predictions and growth rate - which would imply you can still make relative comparisons between organisms as you suggest. That being said, figure 1b suggests that after about 5hrs any selection on growth rate is so small as to be overcome by drift - meaning that variation in predicted values between strains would be mostly due to noise - making comparisons above this threshold essentially meaningless. So, you can try, but I wouldn't expect very strong patterns, and the absence of a pattern in predicted growth rates doesn't necessarily mean the differences don't exist. Data that isn't on the preprint but that may end up in the final published paper suggests that selection on codon usage in organisms with d>5hr is much lower than in organisms with d<5hr.

Predicting growth rate in slow growers is largely an unsolved problem - one I am still interested in. Unfortunately, I don't have a better approach to offer at this time.

from grodon.

Thank you for the prompt reply. Yes, it would be great to predict the growth rate of slow growers because we would have a continuous measure instead of a categorical classification (i.e., d > 5 and d < 5), but I understand the difficulty in predicting the growth rates of slow growers.

I am looking forward to seeing the final publication.

from grodon.