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ahrens_rotation

analyzing_neural_time_series

python implementations of Analyzing Neural Time Series Textbook

autopilot

Distributed behavioral experiments

brian2

Brian is a free, open source simulator for spiking neural networks.

bruker_control

Repository for code running the lab's multi-photon imaging experiments at the Bruker Ultima Investigator scope. Unites Arduino, Prairie View, and GenTL machine cameras in Python.

bruker_pipeline

Python implementation of data processing pipeline for data from the Bruker Ultima microscope in conjunction with bruker_control.

compress-multiphoton

Compression for multiphoton calcium imaging movies and stacks

daisy

Block-wise task scheduling for large nD volumes.

datajoint-python

Relational data pipelines for the science lab

datashuttle

Tool for the creation, validation and transfer of neuroscience project folders.

deeplabcut

Markerless pose estimation of user-defined features with deep learning for all animals, including humans

docker-stacks

Ready-to-run Docker images containing Jupyter applications

donglab

Repository for code generated for Dr. Xinzhong Dong's lab.

efel

Electrophys Feature Extraction Library

foss-heartbeat

FOSS Heartbeat analyses the health of a community of contributors. :heartbeat:

gui

Software for electrophysiology data acquisition

hhmi_summer

Workbooks for some basic coding tutorials with members of Janelia Meyerhoff Scholars

jhu_statsforlabscientists

Statistics Course in JHU SPH

lab-programming-workshop

A workshop for lab meeting about some basics of best practices for writing scientific code!

ln2f

Metadata generation for animals, experiments, equipment, and reagents.

m-track

M-Track: A new software for automated detection of forepaw trajectories in mice

mastodon

A glitchy but lovable microblogging server

multifactory

nengo

A Python library for creating and simulating large-scale brain models

neural_decoding

A python package that includes many methods for decoding neural activity

neuroblueprint

Lightweight data specification for systems neuroscience, inspired by BIDS.

neuropixels

Information about Neuropixels electrode arrays

neurosciences

Computational Neurosciences repository

nwb-schema

Data format specification schema for the NWB neurophysiology data format

nwb_hackathons

Repository for collecting materials from nwb hackathons