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advent-of-code-2021

Advent of code 2021 in R or whatever I feel like

adventofcode2020

Solutions to problems from Advent of Code 2020 in the R language https://adventofcode.com/2020/day/1

adventofcode2022

aoc2015

aranaceae-biodiversity-bold

Diversity analysis of DNA barcode specimen data from Barcode of Life Database

beth-stack

bioinfo-notebooks

python implementations of bioinformatics algorithms to solve Rosalind problems

blast-from-command-line

blast a set of sequences against a set of references

burbot-reference-guided-assembly

Analysis of burbot read-mapping to cod or burbot reference genomes with either `bwa` or `bowtie2`

burbot-variant-calling

Calling genetic variants from Burbot genotyping by sequencing data using freebayes and bcftools

cats

various functions thrown into an R package. Example for package creation

computational-reproducibility-in-r

forked from Nathaniel Haines

cpso-db

cpso_scraper

dictyostelium-genome-assembly-summary

dna-methylation-prediction

ML for predicting methylation status of CpG sites

ez_rentrez

Convenient functions for performing large queries to the NCBI api by wrapping the Rentrez package

hanukkah_of_data_5783

jmoggridge

Hi!

jmoggridge.com

jmoggridge.github.io

my website

labrador_acl_rupture_gwas

A tutorial script for genome-wide association analysis using Plink with an example dataset from a case-control study of ACL rupture in Labrador retrievers (Baker et al. 2017)

manubot_template

moggfit_app

my_model_api

An example production model using tidymodels, plumber, and vetiver

ottawabeaches

Ottawa Beaches dashboard: water quality testing and beach status at five public beaches during 2014-2019

ottbike_counters

Ottawa Bike counters: time series analysis dashboard

parasight

Kmer-based classification of Apicomplexan 18S rRNA genes

polychaeta-phylogeny

Maximum likelihood phylogeny and testing molecular models of evolution for cytochrome c oxidase subunit 1 sequences of Polynoidae from Barcode of Life Database

python-github-action-template

Schedule a Python script with GitHub Actions