Asynchronous output variation of `Parallel.__call__` about joblib HOT 5 CLOSED

Parallel.retrieve ensures that order is maintained when Parallel.call is
called on an iterable. Rather than returning a list of results in the same
order as the input, I propose a generator-based version of Parallel.call
that yields output as it is ready without ensuring order.

workers = Parallel(n_jobs=8)
workers(delayed(sqrt)(i) for i in range(10)) # [0, 1, 4, 9, 16, 25, 36, 49, 64, 81]
workers.async(delayed(square)(i) for i in range(10)) # <generator object _____ at 0x______>

Thoughts? Issues?

It would be fantastic, but I have in mind that it would be a bit tricky
to implement. I somehow fear deadlocks as there is a lock between the
dispatch queue and the retrieve code.

However, I am very open to a pull request to discuss these issues based
on code rather than gut feelings.

The way I would suggest to do it is with a keyword argument 'async' to
Parallel.

Thanks heaps for proposing this, and sorry for my slow reply.

from joblib.

Hi Gael,

Below is a very barebones implementation (with example) of an asynchronous version of Parallel.__call__. I don't have the eye for catching deadlocks that you may have, so would you might taking a look? In particular, I have TODO I'm not quite sure how to solve and another TODO where there's more polling happening than I'd like. Suggestions appreciated.

import multiprocessing
import Queue


class Parallel(object):
  def __init__(self, n_jobs=None):
    self.pool = multiprocessing.Pool(n_jobs)

  def _dispatch(self, iterator, calls):
    n_calls = 0   # number of outputs to expect (could be unbounded)
    for func, args, kwargs in calls:
      n_calls += 1

      # asynchronously execute function and put its result to the iterator when
      # the function returns
      self.pool.apply_async(
          func, args, kwargs, callback=iterator.put
        )

    # tell the result iterator how many results to expect
    iterator.length(n_calls)

  def __call__(self, calls):
    result_iterator = ResultIterator()

    # asynchronously put tasks to the iterator
    self._dispatch(result_iterator, calls)   # TODO this should be done async

    # return iterator holding task outputs
    return result_iterator


class ResultIterator(object):
  """An iterator whose length will be known later"""

  def __init__(self, *args, **kwargs):
    self._queue    = multiprocessing.Queue()
    self._returned = 0
    self._length   = float('inf')

  def put(self, result):
    """Add a new result to the queue"""
    self._queue.put(result)

  def length(self, length):
    self._length = length

  def __iter__(self):
    while True:
      if self._returned >= self._length:
        raise StopIteration()
      else:
        # TODO this takes more resources than it should, no?
        try:
          yield self._queue.get(block=False)
          self._returned += 1
        except Queue.Empty:
          # still waiting for next result
          pass


def wait(n):
  import time
  print "enter wait(%f)" % n
  time.sleep(n)
  print "leave wait(%f)" % n
  return n


if __name__ == '__main__':
  from joblib import delayed
  import random; random.seed(0)

  args    = [i for i in range(4)]
  random.shuffle(args)
  results = Parallel()(delayed(wait)(arg) for arg in args)
  for i, result in enumerate(results):
    print 'returned: (%d) %f' % (i, result)

from joblib.

Hi David,

Unfortunately this barebones implementation does not give us a lot of the
functionalities that are valuable in joblib, in particular error
management, and on-the-fly dispatching of jobs. These are the features
that leed to having 2 threads in the dispatching and potential deadlocks.

I'd much prefer that you submitted a patch to the existing code, so that
we can have a look at it and see if it raises potential issues such as
deadlocks.

Cheers

from joblib.

@GaelVaroquaux I've been toying with capturing exceptions, but I'm having trouble re-raising them later. It seems that the callback argument to Pool.apply_async(..., callback) is applied in a separate thread (not a process, an actual thread!). Are you familiar with a way of capturing exceptions thrown in other threads and re-raising them in the main thread asynchronously?

from joblib.

Done in #1393 and #1463

from joblib.