joelmartin Goto Github PK
Name: Joel Martin
Type: User
Company: JGI
Location: These United States
Blog: http://lbl.gov
Name: Joel Martin
Type: User
Company: JGI
Location: These United States
Blog: http://lbl.gov
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
HWRaid: Free code from http://hwraid.le-vert.net
Test code for testing jgi kbase integration, from data import through assembly.
Measure time and memory consumption. copied from http://www.update.uu.se/~johanb/memtime/
MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
Launch daemon blocking auto mounting of certain volumes
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
pulling apart pindel2vcf to see how it works because its unhappy with our weird plant 30,000+ contig genomes
Tools for working with SAM/BAM/CRAM data
setting up first repo
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.