joeziminski Goto Github PK

ablog

ABlog for blogging with Sphinx

bg-atlasgen

Scripts to package BrainGlobe atlases

brainreg

Fork to fix GitHub issues for Brainglobe's brainreg repository

cornel-ml-course

datashuttle

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

dvars

Insight & Inference for DVARS: 3-part variance decomposition, gives units & p-values to DVARS measures as well as spatiotemporal rs-fMRI diagnostic.

ephysworking

General scripts for ephys

example-ephys-pipelines

Example pipelines for extracellular electrophysiology analysis with SpikeInterface

fancylog

Fancier logging with python.

git-example

NIU team meeting on clean git history

hello-world

test cookiecutter

ibl-neuropixel

Collection of tools to handle Neuropixel 1.0 and 2.0 data

isosplit6

Isosplit clustering

jax_playing

playing with jax

kilosort_2-5_nowhiten

Fast spike sorting with drift correction for up to a thousand channels

learing_algebra_cpp_tutorial

Following the Linear Algebra in C++ course at https://www.youtube.com/playlist?list=PL3WoIG-PLjSv9vFx2dg0BqzDZH_6qzF8-

linear_modelling_and_estimation_examples

Walkthroughs for linear modelling and estimation e.g. ANOVA, MLE

mri_project_manager

Tool for automated MRI scan download from HPC, organise into BIDS, run analysis

mri_tools

Tools for the analysis of MRI (fMRI, anatomical) data

numpyro_playing

phylib

Lightweight electrophysiological data analysis library

pyftpsync

Synchronize directories using FTP(S), SFTP, or file system access. - Forked to provide access to private key argument in pystfp.Connection

python-neo

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

python-packaging-at-jz90

pywavesurfer

PyWaveSurfer is a Python package for reading WaveSurfer data files in Python.

robustcorrtool

robust correlation toolbox (a zipped distrib., same as here, @ https://sourceforge.net/projects/robustcorrtool/)

show-in-file-manager-feedstock

A conda-smithy repository for show-in-file-manager.

slides-akrami-lab-meeting-09042024

On NeuroBlueprint and datashuttle

spikeglx

SpikeGLX recording system GUI [Neuropixels NI]

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.