Giter VIP home page Giter VIP logo

Comments (3)

pbnjay avatar pbnjay commented on September 17, 2024 1

So there's a couple things going on, first that's an Ensembl Identifier so the invocation would actually be:
lollipops -Q ENSEMBL_ID ENSSASG00005000004

Second, there seems to be some issues linking the identifier to Pfam domains. The UniprotKB accession is P0DTC2 but there are no Pfam protein entries for it: http://pfam.xfam.org/protein/P0DTC2

Until it's annotated by Pfam we can't do much easily since we don't know the domain layout. In the meantime, if you know the structure you can edit an existing example (e.g. for http://pfam.xfam.org/protein/U5LNM4 you can save the domain architecture found at http://pfam.xfam.org/protein/U5LNM4/graphic to a local file). After you make your changes you can use -l=yourfile.json to draw the figure.

Hope that helps!

from lollipops.

pbnjay avatar pbnjay commented on September 17, 2024

Please share the command you used and what the error message was.

from lollipops.

dridk avatar dridk commented on September 17, 2024

/lollipops -Q P_ENTREZGENEID ENSSASG00005000004

from lollipops.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    πŸ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. πŸ“ŠπŸ“ˆπŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❀️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.