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codesnips

Automatically exported from code.google.com/p/jordeu-codesnips

crefi

Crefi is a workload creation tool. It can be used to create workload in multiple threads, creating files of different types, different sizes in different directory structures and perform multiple operations on the created data.

cutandrun

Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

eve

REST API framework designed for human beings

eve-swagger

Swagger extension for Eve-powered RESTful APIs

fuse

A Go package for implementing a FUSE file system.

gendas

Data query library highly focus to work with genomic datasets

go-simple-upload-server

Simple HTTP server to save artifacts

golang_prog_fusionfs_debug

intellij-community

IntelliJ IDEA Community Edition

kubernetes

Production-Grade Container Scheduling and Management

manta-testing

metaboigniter

Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.

molindo-elasticsync

nextflow

A DSL for data-driven computational pipelines

nextflow-language-server

Nextflow LSP server

nf-jupyterlite

Demo pipeline to create a JupyterLite report

nf-launcher

nf-report-base64

Create a report from a base64 string

nf-sessions-poc

nf-streams-poc

nf-tests

org.ops4j.pax.wicket

The Pax Wicket Service is an OSGi service for supporting the creation of Wicket applications running on the OSGi platform.

pangenome

Renders a collection of sequences into a pangenome graph.

pycliwrapper

Generic Python CLI wrapper

pytalks

A repository to share some talks

reports-test-nf

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnaseq-nf

A proof of concept of RNAseq pipeline

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing