joscolgan Goto Github PK

ancestry_hmm

ase

repo for code to implement allele-specific gene expression model of Skelly et al. 2011 Genome Res https://dx.doi.org/10.1101/gr.119784.110

biostat561

Course materials for BIOST561

bombus_mated_worker_analysis

Scripts for the analysis of RNA-seq datasets generated for the manuscript "Unexpected worker mating and colony-founding in a superorganism."

bter_immune_gene_evolution

Signatures of adaptation, constraints, and potential redundancy in the canonical immune genes of a key pollinator

bter_neonicotinoid_exposure_experiment-1

Caste- and pesticide-specific effects of neonicotinoid pesticide exposure on gene expression in bumblebees

bter_population_genomics

Genomics of adaptation to a changing world in a wild bumblebee

bumblebee_proteomics

Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause.

filter-fastq

Filter reads from a FASTQ file using a list of identifiers.

genespace

genotype_plot

A set of functions to visualise genotypes based on a VCF

haplogrep-cmd

HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.

hassl_homogeneous_analysis_of_sra_rnasequencing_libraries

joscolgan

Config files for my GitHub profile.

joscolgan.github.io

joscolgan_old_site

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

learn-pandas

Tutorials on how to use pandas effectively to do data analysis

microbiomebestpracticereview

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

orthofinder

Phylogenetic orthology inference for comparative genomics

pipeline-transcriptome-de

Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads

proteus

R package for analysing proteomics data

r-color-palettes

Comprehensive list of color palettes available in r ❤️🧡💛💚💙💜

research-lab-website

This is a simple static research lab website template which can be used by college students / professors.

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

salmo_smolt_study

Salmo smoltification RNA-seq study

salmonid_immune_study

Evolution and expression of the immune system of a facultatively anadromous salmonid

sphaerularia_rnaseq

Infection by the castrating parasitic nematode Sphaerularia bombi changes gene expression in Bombus terrestris bumblebee queens

survivor

Toolset for SV simulation, comparison and filtering

time

A NetLogo extension that brings date/time utilities and discrete event scheduling to NetLogo

trout-migration