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Joseph W. Brown's Projects

beastifier icon beastifier

Generate a heap of BEAST xml files for simulation experiments

cladeage icon cladeage

R functions for estimating clade age from the fossil record

constructureer icon constructureer

Sample SNPs randomly across multiple phylip alignments to construct replicated STRUCTURE input files

es-sim icon es-sim

A simple, simulation-based test for links between diversification rates and continuous traits.

malign icon malign

R package for generating emotive feedback

meld2nexus icon meld2nexus

Lightweight program to merge alignment files, preserving partition information in Nexus CHARSET format.

ncl icon ncl

Nexus Class Library

newick2nexus icon newick2nexus

Lightweight program to convert newick tree file(s) to Nexus format.

start_repos icon start_repos

Some tips for noobs on getting started with version control.

translogrifier icon translogrifier

A lightweight program to remove samples from the results of an MCMC analysis.

treepl icon treepl

Phylogenetic penalized likelihood

turbomedusa icon turbomedusa

Fitting of piecewise diversification models to time-calibrated phylogenetic trees.

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