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inodb avatar inodb commented on August 25, 2024

Actually that commit added gene annotations but not the copy number regulated genes annotations

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inodb avatar inodb commented on August 25, 2024

That still needs to be done. Problem was that it can add a lot of columns, since the annotation is per subtype so we need some way of choosing what annotations to add. Maybe as a parameter to the Makefile

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raylim avatar raylim commented on August 25, 2024

how sparse is the matrix per subtype? Maybe we could collapse it into a single annotation column

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raylim avatar raylim commented on August 25, 2024

i.e., a single column that lists the number of subtypes where a gene is copy-number regulated

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inodb avatar inodb commented on August 25, 2024

I guess that could work as well

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