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applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

blog

This repository contains codes for all of my blog posts since March 11 2015.

brackets

An open source code editor for the web, written in JavaScript, HTML and CSS.

diagrammer

Create diagrams and flowcharts using R.

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

ggplot2

An implementation of the Grammar of Graphics in R

kozich_miseqsop_aem_2013

Reproducible analysis of sequence analysis on a MiSeq

labs

Scripts for the PH525x: Data Analysis for Genomics

metag

microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

miseq_wetlab_sop

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

ngs-qcbox

NGS-QCbox: A Parallel, Automated and Rapid Quality Control Pipeline for Analyzing the Next Generation Sequencing Big Data of Illumina Platform

ob_template

OB_Templates is a Obsidian reference for note templates focused on new users of the application using only core plugins.

peixoto2015_tutorial

Tutorial to reproduce the analysis of Peixoto et al. (2015)

pipette-guide-96

Making you hate normalization from 96-well plates less.

raspberry

Raspberry, a parallelized QC tool for processing raw FASTQ files

rmview

A live viewer for reMarkable written in PyQt5

rodeo

A data science IDE for Python

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

spop

A Spotify client running as a daemon, similar to mpd.

streamingtrim

DNA reads Trimmer

training-collection

Collection of bioinformatics training materials

visnetwork

R package, using vis.js library for network visualization