Name: Jonas Schulte-Schrepping
Type: User
Company: LIMES Institute, University of Bonn
Bio: PostDoc at Systems Medicine, DZNE. Studying immunoregulation in the context of chronic inflammatory diseases using (sc)Omics technologies and bioinformatics
Twitter: jsschrepping
Jonas Schulte-Schrepping's Projects
Preprocessing and peak calling of ATAC-seq data.
Base image for bioinformatics applications.
Docker container with Cellranger-atac 2.0.0 and bcl2fastq2.
Snakemake pipeline for fastqc.
Retrieve information on publications from PubMed and visualize the address of the first/last/all authors on a world map.
Docker container for genomics analyses in R.
Template for DESeq2 Analysis of RNA-seq data
Tutorial for the analysis of scRNA-seq data based on Seurat v3.
Generic script for the analysis of scRNA-seq data pre-processed using https://github.com/Hoohm/dropSeqPipe.
Docker image for velocyto analysis.