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bioimage-io-models

Model repository for bioimage.io

care-labkit-workflow

carecourse

clij

GPU-accelerated image processing within ImageJ/Fiji

clusterify

Port your projects to be cluster-ready!

core-bioimage-io-python

Python libraries for loading, running and packaging bioimage.io models

core-bioimage-io-widgets

cryocare_pip

PIP package of cryoCARE

cryocare_t2t

Singularity image for cryo-CARE

deconoising

deepdive-with-fiji

2020 NEUBIAS talk by Deborah Schmidt

denoiseg

Joint training of denoising and segmentation.

denoiseg_fiji

denoisplit

divnoising

DivNoising is an unsupervised denoising method to generate diverse denoised samples for any noisy input image. This repository contains the code to reproduce the results reported in the paper https://openreview.net/pdf?id=agHLCOBM5jP

dl_tensorflow_pytorch

embedseg

Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images

embedseg-napari

Extending EmbedSeg for use in napari

embedseg_data

Code Repository for EmbedSeg

featureforest

A napari plugin for segmentation using vision transformers' features

fiji

A "batteries-included" distribution of ImageJ :battery:

fiji-howto

How to do things in Fiji from Java

fiji-project

flowquantification

fourierimagetransformer

Fourier Image Transformer (FIT) can solve relevant image analysis tasks in Fourier space.

hdn

This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise removal for microscopy and natural image datasets

howto-api

howto-collector

howto-maven-plugin

proof of concept / prototype

howto-viewer

proof of concept / prototype