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adtseq

adtseq provides simple Rcpp methods to identify Antibody-Derived-Tags in single cell CITE/REAP-seq data

bioscikit

Collection of tools for calculations in life science labs.

codename

Codename Generation for Organizations, People, Projects, and Whatever Else

conflr

Post R Markdown documents to Confluence

distutils

A fast implementation of distance computation with RCpp

f.u.s.e-box_cyberdeck

Some Components of my F.U.S.E Box Cyberdeck for those interested

fackit

FACkit is a complete R toolkit providing transformation, data-exploration, dimensional-reduction and clustering methods tailored to semi-automated analysis of FACS data

fit-sne

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

giana

Ultrafast TCR clustering algorithm based on geometric isometry

igor

IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:

imrep

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.

mixcr-docker

Official MiXCR Docker image

pdbfixer

PDBFixer fixes problems in PDB files

rcppfun

A bunch of exercises I found on a forum (http://www.cplusplus.com/forum/articles/12974/) that I decided to do using Rcpp as a way of learning both Rcpp and some basics of C++ at the same time. My solutions are in the src files along with the exercise descriptions (these will also be in the git readme).

sanity

Filtering of Poison noise on a single-cell RNA-seq UMI count matrix

tcrdist

tessa

Mapping the Functional Landscape of TCR Repertoire