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3d-printing

Designs for 3D printed parts that were developed in the Zhuang Lab.

3d-rcan

Three-dimensional residual channel attention networks

3dscript

aav_fitness_landscape

Analysis for "Comprehensive fitness landscape of AAV capsid reveals a viral gene and enables machine-guided design"

activepathways

Integrative pathway enrichment analysis of multivariate omics data

addictioncourse2015

Code and data (or links to data) for Elissa Chesler's Addiction Course in August 2015.

adolescent-mouse

Analysis pipeline for the adolescent mouse nervous system project

adplugin

Autodock/Vina plugin for PyMol by Daniel Seeliger

afn

Arduino for Neuroscientists

agingmousebrainccinx

Predicted cell-cell interactions of the aging mouse brain

alica

Automated Laser Illumination Control Algorithms

allenbrain

:mouse: Acquiring images from allen brain atlas, mouse ISH experiments in R.

allenbrainapi

Access the Allen Brain Atlas API from MATLAB

allenbrainpy

Python package to analyze Allen Humap Brain genes expression

allenccf

Tools to work with Allen Inst CCF data in matlab

allensdk

alphafold3_plddt

pLDDT Calculator for AlphaFold3 Webserver

alphagozero-python-tensorflow

Congratulation to DeepMind! This is a reengineering implementation (on behalf of many other git repo in /support/) of DeepMind's Oct19th publication: [Mastering the Game of Go without Human Knowledge]. The supervised learning approach is more practical for individuals. (This repository has single purpose of education only)

amap-python

Automated mouse atlas propagation

american-gut-analyses

ampk_motif_analyzer

A position weight matrix based algorithm to score query phosphorylation motifs on similarity to the in vivo AMPK phosphorylation motifs.

analysissuite

R Neuron Analysis Suite provides functions to read/write/analyse neuroanatomical data

anndata

Annotated data.

aptasuite

A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.

aqua

An event-based tool for analyzing and quantifying calcium or glutamate imaging data

araclim

Description of the local Environment in Arabidopsis

archive-scater

An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.

arcontrol

ArControl: Arduino UNO based, visual programming & real-time behavioral platform. It has been applied to Go/No-Go task and 2AFPC task in

arduino

open-source electronics prototyping platform

atac-pipe

Analysis pipeline for ATAC-seq Data