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.github-workflows-

amrcattle_methods

appliedgenomeresearch

appls

awesome-bioinformatics-education

resources for bioinformatics education

bacterial_genomics_software_tools

Curated list of software tools for various aspects of prokaryote genomic analyses

bakheat

Visualize microbial evolution at the SNP level!

bayroot

Bayesian root-to-tip regression for dating reservoir sequences

bovisanalyzer

nextflow pipeline for analyzing Mycobacterium bovis genomes

cartogram

r package for cartogram creation

comp_mut

Compensatory mutations repo

compasscompact

compensatory_mutations

A systematic framework to identify compensatory mutations from M. tuberculosis whole genome sequences

compmuttb

Statistical framework to identify compensatory mutations from M. tuberculosis WGS.

containers-introduction-training

coursecomparativemethods

Examples of application of comparative methods in R

courses

data-science

:bar_chart: Path to a free self-taught education in Data Science!

dataviz

A book covering the fundamentals of data visualization

ddsr

Source code for the book "Doing Data Science in R" by Mark Andrews (SAGE publishers, 2021)

deepphewas

An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)

disease_dynamics

docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

ds3_introduction_python

ds3_r_intro

dwgsim

eidith

emilyncosta.com

epistasis-kan-bdq-mtbc-resistance

Jupyter Notebooks used in data analysis for "The role of epistasis in amikacin, kanamycin, bedaquiline, and clofazimine resistance in Mycobacterium tuberculosis complex" (Vargas et al. 2021)

esquisse

RStudio add-in to make plots interactively with ggplot2