Jason Kai's Projects
Centralized repo of reusable GH actions
Storing solutions to advent of code 2020-2023
Automatic localization and identification of salient brain landmarks
Utility functions for working with AFIDs data / workflows
Validator for the anatomical fiducial placement protocol
snakemake workflow to prep data for autoafids project
Automatically manage globus distribution of Autobids datasets
Efficiently index large-scale BIDS neuroimaging datasets and derivatives
Small python-helper package to simplify initialization of BIDS app CLIs with common arguments
Cookiecutter Python3 project template
A pythonic 3D viewer to visualize and plot brains and neuroimaging data
Utility scripts to facilitate use of Datalad with OSF
Slicer project week Western - data probe for the 3D viewer
Snakemake workflow for downloading and converting MRI data to BIDS
Example snakemake workflow(s) for methods lunch
192 C-PAC pipeline generator
How to create fancy GIFs from an MRI brain image
Gradient Unwarping in Python
Jupyter notebooks related to subcortical reproducibility
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
Dependencies container for hippocampal_autotop (niftynet, minified fsl/ants, c3d, mcr)
pyBIDS, but in Julia (for learning purposes)
jasonkai.com
Khan Lab website
Merge label maps
Repo to store logos for acknowledgements/affiliations
Automated Quality Control and visual reports for Quality Assesment of structural (T1w, T2w) and functional MRI of the brain