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actions_test_repo

actions_test_repo2

admin_tools

Repo to hold various admin tools and utiliites.

amethst_service

AMETHST, or Analysis METHod Selection Tool, is an automated pipeline that makes it possible to objectively assess the relative performance of multiple analysis methods applied to annotation abundance data. Utilizing objective, permutation-based statistics, it can determine the best performing analysis from any arbitrary collection of analyses, and can also determine the degree to which each analysis step (e.g. normalization and reprocessing of the data, selection of distance/dissimilarity metric) affects the results produced by each analysis method.

assembly

An extensible framework for genome assembly.

auth_lite

This is a C implementation of the authentication clients.

auth_service

auto-deploy

Module to instantiate auto-deploy during a standard build

awe

workflow and resource management system for bioinformatics data analysis

awe_monitor

Support for a pool of production awe clients

awe_service

The awe_service repository provides KBase release engineering tools for the deployment of the AWE client and server. The AWE repository is included as a submodule in the awe_service repository and is maintained at http://github.com/MG-RAST/AWE.

awe_utils

A collection of utilities for working with AWE

bootstrap

browse

This module provides a workspace browser for workspaces. The main component of this repository is the workspace browser app that is contained in the ui-common repository. This repository provides the necessary release engineering to deploy the workspace browser as an independent component.

bulk-ui

Bulk Uploader for KBase

bulk_io

Design for bulk upload, download, and transform operations

bulks3upload

cap

Identification of core annotation pipeline (CAP)

cbd

cdd_service

ceph_initialize

Docker image that can be used to initialize a ceph cluster (until the ceph docker images catch up)

cmonkey

collections_api

Collections API Service

communities_api

api

communities_qc

comparative_genomics

comparative genomics at proteome and genome level

concierge

Concierge

condor-rest-api

REST interface to HTCondor

condorflask

Proof-of-concept Flask-based REST API for HTCondor