Comments (8)
kbroman
commented on September 2, 2024
Thanks, Peter. Yeah, it would be great if you could tell me exactly what I need to do on my end to remove this.
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pcarbo
commented on September 2, 2024
Sure. It's pretty simple. I followed the steps described here. Note this clones the repo in directory qtl.git. The BFG command I used was java -jar bfg.jar --strip-blobs-bigger-than 95M qtl.git.
To be safe, I suggest making a copy of the repo before you do this.
Let me know if you run into trouble with these steps.
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kbroman
commented on September 2, 2024
Okay, I tried it. Does it seem to have worked?
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pcarbo
commented on September 2, 2024
d.txt still seems to be there:
Filename Git id
------------------------------
d.txt | 3a8f7171 (120.2 MB)
Did you call git push at the end?
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kbroman
commented on September 2, 2024
I did, and parts seemed to push, though I also got a bunch of "remote rejected" errors.
Counting objects: 498, done.
Delta compression using up to 24 threads.
Compressing objects: 100% (195/195), done.
Writing objects: 100% (498/498), 10.70 MiB | 7.31 MiB/s, done.
Total 498 (delta 311), reused 474 (delta 293)
remote: Resolving deltas: 100% (311/311), completed with 18 local objects.
To github.com:kbroman/qtl.git
! [remote rejected] refs/pull/1/head -> refs/pull/1/head (deny updating a hidden ref)
! [remote rejected] refs/pull/1/merge -> refs/pull/1/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/10/head -> refs/pull/10/head (deny updating a hidden ref)
! [remote rejected] refs/pull/10/merge -> refs/pull/10/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/11/head -> refs/pull/11/head (deny updating a hidden ref)
! [remote rejected] refs/pull/13/head -> refs/pull/13/head (deny updating a hidden ref)
! [remote rejected] refs/pull/14/head -> refs/pull/14/head (deny updating a hidden ref)
! [remote rejected] refs/pull/16/head -> refs/pull/16/head (deny updating a hidden ref)
! [remote rejected] refs/pull/2/head -> refs/pull/2/head (deny updating a hidden ref)
! [remote rejected] refs/pull/2/merge -> refs/pull/2/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/20/head -> refs/pull/20/head (deny updating a hidden ref)
! [remote rejected] refs/pull/20/merge -> refs/pull/20/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/21/head -> refs/pull/21/head (deny updating a hidden ref)
! [remote rejected] refs/pull/21/merge -> refs/pull/21/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/22/head -> refs/pull/22/head (deny updating a hidden ref)
! [remote rejected] refs/pull/24/head -> refs/pull/24/head (deny updating a hidden ref)
! [remote rejected] refs/pull/25/head -> refs/pull/25/head (deny updating a hidden ref)
! [remote rejected] refs/pull/28/head -> refs/pull/28/head (deny updating a hidden ref)
! [remote rejected] refs/pull/29/head -> refs/pull/29/head (deny updating a hidden ref)
! [remote rejected] refs/pull/29/merge -> refs/pull/29/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/3/head -> refs/pull/3/head (deny updating a hidden ref)
! [remote rejected] refs/pull/3/merge -> refs/pull/3/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/30/head -> refs/pull/30/head (deny updating a hidden ref)
! [remote rejected] refs/pull/30/merge -> refs/pull/30/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/31/head -> refs/pull/31/head (deny updating a hidden ref)
! [remote rejected] refs/pull/31/merge -> refs/pull/31/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/32/head -> refs/pull/32/head (deny updating a hidden ref)
! [remote rejected] refs/pull/33/head -> refs/pull/33/head (deny updating a hidden ref)
! [remote rejected] refs/pull/34/head -> refs/pull/34/head (deny updating a hidden ref)
! [remote rejected] refs/pull/36/head -> refs/pull/36/head (deny updating a hidden ref)
! [remote rejected] refs/pull/36/merge -> refs/pull/36/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/37/head -> refs/pull/37/head (deny updating a hidden ref)
! [remote rejected] refs/pull/37/merge -> refs/pull/37/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/38/head -> refs/pull/38/head (deny updating a hidden ref)
! [remote rejected] refs/pull/4/head -> refs/pull/4/head (deny updating a hidden ref)
! [remote rejected] refs/pull/4/merge -> refs/pull/4/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/43/head -> refs/pull/43/head (deny updating a hidden ref)
! [remote rejected] refs/pull/45/head -> refs/pull/45/head (deny updating a hidden ref)
! [remote rejected] refs/pull/45/merge -> refs/pull/45/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/46/head -> refs/pull/46/head (deny updating a hidden ref)
! [remote rejected] refs/pull/46/merge -> refs/pull/46/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/47/head -> refs/pull/47/head (deny updating a hidden ref)
! [remote rejected] refs/pull/47/merge -> refs/pull/47/merge (deny updating a hidden ref)
! [remote rejected] refs/pull/48/head -> refs/pull/48/head (deny updating a hidden ref)
! [remote rejected] refs/pull/7/head -> refs/pull/7/head (deny updating a hidden ref)
! [remote rejected] refs/pull/7/merge -> refs/pull/7/merge (deny updating a hidden ref)
error: failed to push some refs to '[email protected]:kbroman/qtl.git'
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pcarbo
commented on September 2, 2024
Hm, strange. That is apparently not an issue. When I applied these same steps to my fork of qtl, it worked fine. To see that it worked, if you try to run the same steps on my fork, you should get the following error:
This repo has been processed by The BFG before! Will prune repo before
proceeding - to avoid unnecessary cleaning work on unused objects...
Completed prune of old objects - will now proceed with the main job!
Scanning packfile for large blobs completed in 140 ms. Warning : no
large blobs matching criteria found in packfiles - does the repo need
to be packed?
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pcarbo
commented on September 2, 2024
One suggestion: as an experiment, you could try forking the qtl repo first, e.g., using the steps described here. Or maybe not worthwhile trying to solve. :(
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kbroman
commented on September 2, 2024
Somehow this problem seems to have gone away, so I'm closing the issue.
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