kdkorthauer Goto Github PK

annotatr

Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.

aod

Analysis of Overdispersed Data

available

Check if a package name is available to use

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

benchmark-fdr

Benchmarking study of recent covariate-adjusted FDR methods

benchmarkfdr-shiny

Shiny App for exploring results from "A practical guide to methods controlling false discoveries in computational biology"

biocstickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

bsseq

Devel repository for bsseq

bumphunter

bumphunter

c-data-2017

cfmedipseq-rcc

Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"

dmrseq

R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

dmrseqpaper

Code to reproduce results of the dmrseq paper

drivergenepathway

drivergenepathway2

eurobioc2018

European Bioconductor Meeting 2018

fdrreg

False discovery rate regression

festivalworkshopvignettes

Vignette for Single-Cell workshop at Festival of Genomics California 2016

fungeno2019

giftexchange

Fun little helper script to randomize assignments in a gift exchange pool

jsm2016slides

Links to slides for talks at the 2016 Joint Statistical Meetings in Chicago

kdkorthauer.github.io

Personal website (archived)

madgic

mcc

Collaboration with Cathy Wu - Merkel Cell Carcinoma

pheatmap

Pretty heatmaps

pr2017replicaton

project_2

rafalab.github.io

web page

rat_imprintome

repressivecapacity

Reanalysis of the repressive capacity of promoter DNA methylation