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flye

Fast and accurate de novo assembler for single molecule sequencing reads

gbs-snakemake

Classes for GBS analysis using snakemake and stacks

gbs_genotype

gbsman

GBSman manages the analysis and storage of reduced representation sequencing.

gbsqc

Demo Genotyping-by-Sequencing qc pipeline (KM version)

gbstrim

Trim GBS reads of adaptors and reduce over-inflation of allele counts.

gdm

R package for Generalized Dissimilarity Modeling

gdmhelpers

gduserv_qjobs

qjobs from gduserv

gfakluge

A C++ library and utilities for manipulating the Graphical Fragment Assembly format.

gi-to-tax

Finds taxonomic information for a given set of genbank identifiers, using the NCBI taxonomy database.

git-workshop-workspace

glassbox-logger

gridlmm

GridLMM package

gus-ld

Genotyping Uncertainty with Sequencing data - Linkage Disequilibrium

hail

Hail: extract lines from a file, a la `head -n x | tail -n y`

hdf5-blosc

Filter for HDF5 that uses Blosc

hdf5.jl

Saving and loading data in the HDF5 file format

holy-build-box

System for building cross-distribution Linux binaries

hons-finalpresentation

Final presentation of my 2013 Honours project

hons-labnotebook

Honours Lab Notebook

hons-thesis

Honours thesis for Kevin Murray's 2013 honours project.

hons-thesis-stats

Some Rmd/Rnw files to analyse some datasets from my thesis. Pilfer methods at will, data is not for the taking.

htslib

C library for high-throughput sequencing data formats. This is a fork of the official repository.

hugo-nicer-figures

hugo-theme-even-less

A fork of Hugo's Even theme with some extra features I needed

instruct

InStruct Bayesian MCMC Global Population Structure Analysis Program

jared_climate

julia

The Julia Language: A fresh approach to technical computing.

jupytext

Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts