Comments (2)
Hi Niklas,
Thanks a lot for the comments.
Looking forward to the benchmark test.
Best,
Jianjun
from getorganelle.
Hi Niklas,
I saw your latest manuscript (https://www.biorxiv.org/content/10.1101/665869v3.full) and found the mentioned issue of no test data. This is already solved but I forget to leave a msg here.
You can find a small test at homepage (https://github.com/Kinggerm/GetOrganelle#test) or more tests at GetOrganelle.wiki (https://github.com/Kinggerm/GetOrganelle/wiki/Examples) with both plastome and mitogenome assembly.
Best,
Jianjun
from getorganelle.
Related Issues (20)
- Please fix SPAdes citation HOT 2
- Estimated XX base-coverage = 0.00 HOT 5
- Disentangling failed: 'Unrecognized GFA version number: 1.2' HOT 2
- BLAST Database error: Error: Not a valid version 4 database. HOT 3
- ERROR ON UNZIPPING THE .gz file HOT 3
- ERROR: Disentangling failed: Failed in 'from scipy import stats, inf, log'! HOT 3
- Regarding the Use of Incomplete Plant Mitochondrial Genome Assembly Outputs for Subsequent Analysis HOT 2
- failing from flye assembly graph of a phage genome with 4 circular paths HOT 5
- Disentangling failed: 'Unable to generate result with single copy vertex percentage < 50%' HOT 20
- TypeError: execute_blast() got an unexpected keyword argument 'percent_identity' HOT 2
- An input/output error while running Getorganelle HOT 1
- Increase the insert size length to improve assembly completeness HOT 1
- difference in assembly size of circular and scaffold cp genomes #326 HOT 2
- No target organelle contigs found / no sequence hit our LabelDatabase HOT 1
- No animal_mt seed reads found!
- TypeError: can't convert complex to int. HOT 1
- math domain error
- get_organelle_from_reads.py can not find the embplant_nr db in SGE
- something went wrong when using -F anonym without --target-genome-size
- Abnormal assembly size due to incorrectly including shallow-coverage mt contig(s) in the embplant_pt selected_graph HOT 2
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