Comments (2)
Hi Simon,
You are currently using an outdated version of psutil (1.2.1). Thanks for letting me know this. I would add notes to the README.md later.
To solve your problem, please update your psutil version to >3.0. You may use pip install -U psutil
.
Good luck,
Jianjun
from getorganelle.
Hello Jianjun,
Thanks a lot. The installation seems successful now.
Best,
Simon
from getorganelle.
Related Issues (20)
- I have problem with running getorganelle in cluster HOT 1
- Crashes while running GetOrganelle when I try to use all raw reads HOT 2
- Slimming failed and no valid assembly graph found HOT 6
- How to jugde circular? HOT 1
- How to provide multiple sets of paired-reads? HOT 1
- Incomplete animal mitochondria HOT 11
- “Disentangling failed: 'Multiple isolated embplant_pt components detected! Broken or contamination?” AND the assemble length range different from reference HOT 2
- Please fix SPAdes citation HOT 2
- Estimated XX base-coverage = 0.00 HOT 5
- Disentangling failed: 'Unrecognized GFA version number: 1.2' HOT 2
- BLAST Database error: Error: Not a valid version 4 database. HOT 3
- ERROR ON UNZIPPING THE .gz file HOT 3
- ERROR: Disentangling failed: Failed in 'from scipy import stats, inf, log'! HOT 3
- Regarding the Use of Incomplete Plant Mitochondrial Genome Assembly Outputs for Subsequent Analysis HOT 2
- failing from flye assembly graph of a phage genome with 4 circular paths HOT 5
- Disentangling failed: 'Unable to generate result with single copy vertex percentage < 50%' HOT 20
- TypeError: execute_blast() got an unexpected keyword argument 'percent_identity' HOT 2
- An input/output error while running Getorganelle HOT 1
- Increase the insert size length to improve assembly completeness HOT 1
- difference in assembly size of circular and scaffold cp genomes #326 HOT 2
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