Comments (5)
Is it an out-of-memory issue?
from getorganelle.
It may probably be caused by a disk access issue.
from getorganelle.
Hi Jin,
Thank you for the response.
Can you kindly tell me what I should do to run getorganelle in my device?
from getorganelle.
I didn't see a clue here. It's not something people can do from the tool side.
It was an environmentally dependent issue. Free up some space and make sure you have the right permissions.
from getorganelle.
OK. Thank you. Will do!
from getorganelle.
Related Issues (20)
- Invalid information provided HOT 1
- dogged request of help with Invalid version spec: =2.7 HOT 5
- ERROR: slimming the pre-assembled graph failed HOT 1
- not able to to run "summary_get_organelle_output.py" and "IndexError:list out of range" HOT 1
- I have problem with running getorganelle in cluster HOT 1
- Crashes while running GetOrganelle when I try to use all raw reads HOT 2
- Slimming failed and no valid assembly graph found HOT 6
- How to jugde circular? HOT 1
- How to provide multiple sets of paired-reads? HOT 1
- Incomplete animal mitochondria HOT 11
- “Disentangling failed: 'Multiple isolated embplant_pt components detected! Broken or contamination?” AND the assemble length range different from reference HOT 2
- Please fix SPAdes citation HOT 2
- Estimated XX base-coverage = 0.00 HOT 5
- Disentangling failed: 'Unrecognized GFA version number: 1.2' HOT 2
- BLAST Database error: Error: Not a valid version 4 database. HOT 3
- ERROR ON UNZIPPING THE .gz file HOT 3
- ERROR: Disentangling failed: Failed in 'from scipy import stats, inf, log'! HOT 3
- Regarding the Use of Incomplete Plant Mitochondrial Genome Assembly Outputs for Subsequent Analysis HOT 2
- failing from flye assembly graph of a phage genome with 4 circular paths HOT 5
- Disentangling failed: 'Unable to generate result with single copy vertex percentage < 50%' HOT 20
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