Comments (3)
Kinggerm
commented on August 12, 2024
1
Hi, what's the memory size of your machine?
I guess it's because you were running out of memory.
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dr-a7madoh
commented on August 12, 2024
Sorry for the last reply,
It is 16 GB.
Thanks
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Kinggerm
commented on August 12, 2024
16 GB will be too small for mitogenome assembly. You could try a new run with --memory-save, but I guess it's insufficient in following steps.
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Related Issues (20)
- ERROR: Assembling failed due to SPAdes failure HOT 4
- More sequence.fasta？
- strand + or - ? HOT 1
- Issue : Invalid characters # Whitespace not allowed HOT 2
- Using embplant_mt and embplant_pt not possible HOT 2
- GetOrganelle aborts with error ("Killed") HOT 3
- Problems with canu-produced gfa processing HOT 1
- Program killed during early extension; RAM issue unlikely HOT 2
- ERROR: slimming the pre-assembled graph failed
- AssertionError: Invalid characters (e.g. space, non-ascii) for SPAdes in path: /home/ruizhang/zhaoliaocheng/Viburnum cpDNA/LYL47/plastome_output
- 2023-05-24 14:15:33,428 - INFO: Round 9: 10081574/10081574 AI 89119 AW 2714392 2023-05-24 14:15:33,428 - INFO: No more reads found and terminated ... 2023-05-24 14:16:02,153 - INFO: Extending finished. HOT 1
- incomplete assembly graph HOT 2
- Discrepancy between get_organelle_from_reads and summary_get_organelle_output logs HOT 1
- Set Startingpoint of Cicular Mitochondrial Genome HOT 2
- conda install error: conda version 23.5.0 too high HOT 2
- Please explain the output - multiple fasta HOT 1
- assembly_graph.fastg finished with no target organelle contigs found! HOT 7
- empty filtered paired HOT 2
- Problems with chloroplast genome assembly stagnation HOT 4
- Invalid information provided HOT 1
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