knoweng Goto Github PK

autophrase

AutoPhrase: Automated Phrase Mining from Massive Text Corpora

clusdca

Software to accompany ISMB2015 paper

clustereng

Educational web resource for clustering and visualizing high-dimensional data

clustering_evaluation

Evaluates the clustering result of KnowEnG's Samples Clustering Pipeline

clustype

Automatic Entity Recognition and Typing for Massive, Domain-Specific Corpora

cotype

CoType: Joint Extraction of Typed Entities and Relations with Knowledge Bases

cwl-gene-prioritization

CWL descriptions for the gene prioritization workflow

cwl-gene-prioritization-check-results

check-results tool for cwl-gene-prioritization

data_cleanup_pipeline

Maps gene-label row names of a spreadsheet to Ensembl names and checks data formats

dpclass

drawr

Discriminative Random Walk with Restart

feature_prioritization_pipeline

General purpose features prioritization pipeline

gene_prioritization_pipeline

Network-based prioritization of genes associated with phenotypes

general_clustering_pipeline

Clusters columns of any data frame

geneset_characterization_pipeline

Ranks a user supplied gene set against KnowEnG's gene sets collection

genvisage

inpherno

InPheRNo (Inference of Phenotype-relevant Regulatory Networks) is a computational tool to reconstruct phenotype-relevant transcriptional regulatory networks (TRNs) using transcriptomic and phenotypic data.

kn_builder

Fetch and parse source files to construct KnowEnG Knowledge Network

kn_fetcher

Download a subnetwork from the KnowEnG Knowledge Network

kn_mapper

Maps names to entity IDs in the KnowEnG Knowledge Network

knoweng.github.io

knoweng_all_pipelines

knoweng_cwl

CWL for KnowEnG pipelines for cwltool and CGC

knoweng_pipelines_library

Python scripts to support KnowEnG pipelines

knownet_pipeline_tools

Setup resources and start KN_Builder

kubernetes_aws

Configuration files and README's for setting up Kubernetes environments on AWS

metapath_analysis

Tool for finding genes related to a gene set using patterns of connectivity meta path features in heterogeneous networks

network_prepper

Prepare a user submitted network for KnowEnG knowledge-guided analysis

pacer

PACER tool for pathway identification from chemosensitivity data

pgenmi

Probabilistic Gene Expression in the Middle Analysis