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alphamissense

ancestree

An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data

annotation-tools

Tools developed for AACR GENIE to allow annotation of vcf and maf files from a number of centers and merging the results

asap

Program for the analysis and visualization of whole-slide images in digital pathology

ban-notifier

A simple bot for bans and mutes

blood_cell_image_segmentation

This project shows an automated deep learning based computer vision algorithm that can provide a complete blood cell count (i.e. the number red blood cells, number of white blood cells, different types of white blood cells, number of plateletes etc.) in a person's body from a digitized blood smear image of his blood sample. The neural network used

camicroscope

Digital pathology image viewer with support for human/machine generated annotations and markups.

cellprofiler

An open-source application for biological image analysis

charm

cnlp_transformers

Transformers for Clinical NLP

ctpnetpy

The Python package of cTP-net

deepfacelab

DeepFaceLab is the leading software for creating deepfakes.

deepfacelabclient

Just an app to use DeepFaceLab with a user interface.

docsgpt

GPT-powered chat for documentation, chat with your documents

geconet-tool

genemutationfromhe

Gene mutation and pathway activity prediction from H&E slides

genome-nexus

Backend server for Genome Nexus

git_test

icd-10-cm-embedding

LLM Embeddings for ICD 10 Data

maps

software for the MAPS method

mod_wsgi

Source code for Apache/mod_wsgi.

mutlitask_vnn

Multi-task learning VNN

mvpa

Multivariate Pattern Analysis (MVPA) R package

napari

napari: a fast, interactive, multi-dimensional image viewer for python

ogre

omics-netrank

openbio

openpbta-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project

openslide-python

Python bindings to OpenSlide

ppi

New RMF Method for analysis human proteins and disease prognosis