Krol's Projects
analyses_vcf
BASH script to install BigBlueButton in 30 minutes.
BigBlueButton recorder using puppeteer to export as webm or mp4 file & Live RTMP broadcasting
BWK awk modified for biological data
Bioinformatics Journal Club
:microscope: Path to a free self-taught education in Bioinformatics!
SV detection from paired end reads mapping
A tool to circularize genome assemblies
A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.
datasciencecoursera
The Leek group guide to data sharing
De novo assembler for single molecule sequencing reads using repeat graphs
Official code repository for GATK versions 4 and up
The Leek group guide to genomics papers
GRIDSS: the Genomic Rearrangement IDentification Software Suite
Tools for haplotype-wise reconstruction of pseudomolecules
Monorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, and core plugins. To customize behaviors, write an in-house plugin.
R interface to the JBrowse 2 Linear Genome View.
Config files for my GitHub profile.
Mapping pipeline for data generated using Arima-HiC
Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing
Population genetics analyses
Stacks wrapper
snakemake workflow for mappind single/paired datas
A guide to reading scientific papers
R package development - the Leek group way!
A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data