ktonosaki Goto Github PK

.atom

abyss

:microscope: Assemble large genomes using short reads

aws

bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

book

chatgpt-slackbot

OpenAIのChatGPT APIをSlack上で利用するためのSlackbotスクリプト

cisdecoding_cistrome

dbg2olc

A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.

deepsignal-plant

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

dplyr

dplyr: A grammar of data manipulation

fujiplot

:mount_fuji: Fuji plot—a circos representation of multiple GWAS results— :mount_fuji:

gawn

Genome Annotation Without Nightmares

gfatools

Tools for manipulating sequence graphs in the GFA and rGFA formats

mcscanx

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

methylnet

Modular framework for deep learning predictions on methylation data.

methylpy

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

minigraph

Proof-of-concept seq-to-graph mapper and graph generator

necat

Nanopore data assembler

plantmerfish

plotsr

Tool to plot synteny and structural rearrangements between genomes

python_bioinfo_2022

qtl-seq

QTL-seq pipeline to identify causative mutations responsible for a phenotype

ragtag

Tools for fast and flexible genome assembly scaffolding and improvement

scientific-visualization-book

An open access book on scientific visualization using python and matplotlib

scrnaseq_handson

PythonによるシングルセルRNA-seq解析。

sequencetubemap

displays multiple genomic sequences in the form of a tube map

snmultiome

snpgenie

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

snrnaseq

This is code for snrnaseq data process

stickyland

Break the linear presentation of Jupyter Notebooks with sticky cells!