Comments (4)
Yes that is very likely the problem. I can update that, thanks for pointing it out.
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Hi @satroz, do you mind letting me know how soon you need this? I am planning a significant update to deeplift in the next week or so (which will be accompanied by a new arXiv preprint), and I would ideally like to bundle this in with the update. However, if you need it soon, let me know and I will prioritize that.
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Thanks ! Yeah no worries, I guess I can wait another week or two for the big update.... but if you think it'll take longer than that then would be nice to have it sooner then ;)
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Hey @satroz, big update coming soon (need to get approval from my adviser to release it) but in the mean time I just pushed an update to the current tensorflow branch that lets you specify the axis of normalisation. I tested it out on a model with tensorflow ordering (weights of first conv layer had shape 4xx1x) and it seems to work - you can view the notebook with the test here: https://github.com/AvantiShri/model_storage/blob/4143cfce7e61611d4c42984578e420cd7556c4b6/deeplift/genomics/test_mean_normalise_weights.ipynb
Let me know if you run into any trouble. I am hoping to push the big update out by Tuesday, pending a green light.
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Related Issues (20)
- categorial variables HOT 2
- adjustment for softmax HOT 2
- KeyError: 'batch_input_shape' while using deeplift on keras
- KeyError: 'zeropadding2d' HOT 1
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- bpnet/deepexplain issue
- genomics training example HOT 1
- DeepLIFT with the RevealCancel rule
- Deeplift with Cifar10 HOT 3
- how do I download deeplift version of 0.5.1-theano HOT 2
- How to use deeplift for regression HOT 1
- Does DeepLIFT support to use deep residual? I have a model with deep residual, and want to use DeepLIFT to interpret it too. Thanks! HOT 1
- can deeplift explain text classification? HOT 2
- Sequential model input layer convert HOT 3
- Aggregating contribution scores
- keras2_mnist_cnn_allconv.h5 of MNIST demo can't be decoded
- Dimension error in a multi-input, multi-channel CNN HOT 2
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