Comments (1)
We need to include the r.2 cutoff. Also, we should have it spit out the help if we just type makeHaploview.sh, instead of using -h.
from coetzee_seq_analysis.
Related Issues (20)
- Comments. HOT 1
- Shorten argument requirement.
- inconsistent Rsquared values
- Create a log file
- add .R file, and generalize HOT 4
- I'd like eyes on the newest version of the script HOT 4
- script will not die gracefully HOT 1
- Only plot those with a specified cutoff HOT 1
- size of region can be inconsistent
- need to characterize biological features with r.2 cutoff
- check ftp site instead of home directory
- bed format check earlier
- one candidate SNP found from 2 different risk SNPs give different biofeatures HOT 1
- same candidate SNP and risk tag SNP, but different LOD and r.2
- ERROR- one SNP in one biofeature per one risk tagSNP?
- Sort Bed files HOT 3
- Implement: Use HOMER to annotate surrogate SNPs
- Make haploview LD block and haplotype
- reduce.by.features=FALSE <- not work in FunciSNP(ver.0.1.7)
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from coetzee_seq_analysis.