Comments (4)
Hi everybody,
Same issue there. Can try to add on this.
-
2d labeling looking good, so I figured out the problem is probably introduced during calibration
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calibration step looks normal. The initial pixel error is big but I guess it is how it should be as it decreases?
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triangulation is probably the problem. It takes much longer than on the example screenshots and the behavior of the cost function also looks weird.
And needless to say in the end I get exactly the same videos as @tzeriver
I thought, maybe it is some kind of package version issue as I installed Anipose in the latest DLC-GPU environment. But any ideas are much appreciated.
Thank you,
Daniil
from anipose.
Hello everyone,
I have encountered the same problem as described above.
The resulting model looks similar to @tzeriver and my 2D calibration looks ok (as described by @BerezhnoyD, without any error messages, etc.).
I am using:
- Anipose: version 1.0.1
- DeepLabcut: version 2.2.1
- System: Ubuntu 20.04.4 LTS
Are there any news regarding this issue @lambdaloop ?
Your help is very much appreciated.
from anipose.
Hi again,
@greyishfox
It seems that the problem was not with the triangulation itself, but with the post-processing filters. They are not well documented, so I had to figure them out by myself. Or @lambdaloop maybe there is a documentation that can help?
So, if I'm not mistaken, there are two algorithms to smooth the data and get rid of the outliers.
- RANSAC (actually works good)
- Optimization based on the constraints (adds this jerky movement if there are too many outliers, kind of ties the whole model to the outliers)
If we apply both of them, we get the videos described by @tzeriver. But if we leave only the RANSAC in the config file we get the graphs like in the tutorial. Solved the issue for me.
Hope this helps
Sincerely,
Daniil
from anipose.
Hi @BerezhnoyD
Thank you very much for your help!
Meanwhile I also get nice 3D models similar to the example videos shown in the tutorial but with a slightly different approach.
Since version v0.9.0 is the last listed tag of this project, I assumed that version v1.0.1 is not yet stable. Therefore, I simply installed the last stable version v0.9.0.
For anyone unsure how to install a different version:
Instead of running "python -m pip install anipose
" (from the installation guide) I pointed to an earlier version of my local repo using git (command: git checkout v0.9.0
) and installed this version with "python -m pip install -e <PATH TO PROJECT>
".
Anyway, depending on the usecase, @BerezhnoyD's solution is probably the better way to go.
from anipose.
Related Issues (20)
- anipose label-3d(Unable to access the X Display, is $DISPLAY set properly?)
- Error when running anipose analyze on the hand demo tutorial
- anipose label-3d results not clear on the hand demo tutorial HOT 1
- aniposelib multiple camera calibration HOT 1
- support for maDLC projects
- Could not build calibration graph HOT 1
- Link to google slides in tutorial is broken HOT 1
- module 'cv2.aruco' has no attribute 'CharucoBoard_create' HOT 7
- TypeError when running 2d filter on tutorial data HOT 10
- Perfect calibration
- Reverse triangulation HOT 3
- Error with Anipose Label-3d command HOT 6
- Anipose analyzes videos, but doesn't complete through anipose filter HOT 2
- Anipose analyze not analyzing videos HOT 1
- Multi Camera Support
- Multi camera calibration HOT 6
- Anipose won't analyze HOT 3
- Naming of cameras for calibration
- Struggling to get a calibration .toml HOT 3
- Suggestions for multi-camera calibration
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